PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01970.1.g00080.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 317aa    MW: 34194.6 Da    PI: 9.8426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01970.1.g00080.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30177236159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +Cpvkkkv+rsaed+++++ tYegeHnh 
  Zpz_sc01970.1.g00080.1.sm.mk 177 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCPVKKKVQRSAEDKTILVATYEGEHNHG 236
                                   58***************************99****************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.142172238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-29175238IPR003657WRKY domain
SuperFamilySSF1182907.32E-26176238IPR003657WRKY domain
SMARTSM007747.7E-35177237IPR003657WRKY domain
PfamPF031066.6E-25178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDPWIGQPSL SLDLNVGLPT ARPVPAKKAL VEENFLPAKK GRGQVEALEA ELRLVSEENS  60
RLSEMLRAAV AKYTELRGHV NDMMAAGHTR QSSTSEGGSA SPPRKRVRSD SLDTKPLATA  120
ASGFAVPDQM ECTSGAAAAT AAAVAFHEPG RRIREGCKPK VTRQYVHADP SDLSLVVKDG  180
YQWRKYGQKV TKDNPCPRAY FRCSFAPSCP VKKKVQRSAE DKTILVATYE GEHNHGQPTQ  240
HDGRNAAAKP QTSNAAAARA LSPPQQKQQE AAGPSEEVVR KNLAEHMAAT LTRDPGFKAA  300
LVSALSGRIL ELSPTRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-211762381374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283691e-106KJ728369.1 Zea mays clone pUT6651 WRKY transcription factor (WRKY124) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965726.11e-159PREDICTED: probable WRKY transcription factor 60
TrEMBLK3XYA61e-159K3XYA6_SETIT; Uncharacterized protein
STRINGSi006914m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-58WRKY DNA-binding protein 40